mindboggle
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nipy
Automated anatomical brain label/shape analysis software (+ website)
Dear Mindboggle project maintainers. I am currently trying to use the Mindboggle-101 dataset v3 'labels.DKT31.manual+aseg.MNI152.nii.gz' volume label files from https://osf.io/9ahyp/ as the basis for a multi-atlas segmentation. During this work...
Dear Sir The error is below when I am running a test, how to fixed it ? Thanks a lot ! sudo docker run --env-file /home/xubin/.env --rm -ti -v $HOST:$DOCK...
Hello, I want to compare the result of freesurfer automatic segmentation with the result of my proposed method. I plan to use Lh.label.dkt31.annot as the ground truth, so which file...
Another location where #190 needed to be fixed
Hello, I'm sorry to have come to disturb you again The six files (twins-2, mmrr-3t7t, hln-12-2, oasis-20-1) mentioned to you in mindboggle dataset have been damaged. Would you mind sending...
I have a super simple question. I have built a docker image for which I would like to install this library. I am able to install nipy (`RUN pip install...
Hello, when I use mri_surf2surf conmand in OASIS-TRT-20-1 file `mri_surf2surf --srcsubject OASIS-TRT-20-1 --trgsubject fsaverage5 --hemi lh --sval-annot /home/tj/application/freesurfer/subjects/OASIS-TRT-20-1/label/lh.labels.DKT31.manual.annot --tval /home/tj/application/freesurfer/subjects/min_template/OASIS-TRT-20-1-target/lh.labels.DKT31.manual.annot` it appears can't allocate memory error. I also find OASIS-TRT-20-rescan-1,...
runing error
Hello, The first four commands can be run, but the last four will report errors. Do you know where the error is？ recon-all -i t1weighted_brain.MNI152.nii.gz -s bert1 -all recon-all -i...
Hello, I have download the mindboggle datasets in https://osf.io/wzqmg/. But I found seven data have problem. I want to template the lh.area lh.labels.DKT25.manual.annot to fsaverage5 space using mri_surf2surf 1、OASIS-20-1: when...
Hello, I'm trying to process some data through mindboggle on data that was ran successfully through Freesurfer 6. It doesn't matter which scan I use, the same error occurs. I'm...
