heudiconv
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nipy
A flexible DICOM converter for organizing brain imaging data into structured directory layouts
### Summary Originally raised in https://github.com/nipy/heudiconv/pull/482#issuecomment-1083517716. I messed up the workflow for the population of the `"IntendedFor"` field, and it doesn't behave as expected. Because the population of `"IntendedFor"` needs...
in some cases we can figure out what `_acq` or `_proc` entity to add (e.g. for motion correction) but it would be hard to impossible to assemble the knowledge about...
### Summary Running heudiconv (with reproin) hangs when converting data with the latest version installed with pip hangs for ~ 15 mins and then continues running fine. The same delay...
hey We (BIDS maintainers) are trying to see if we can improve the quality of the average README in BIDS dataset. Those tend to be pretty thin and are missing...
Halo, I am following: https://reproducibility.stanford.edu/bids-tutorial-series-part-2a/#heuman1 My dicoms from a Siemens Prisma fit scanner are in this folder: /media/SamSSD/QA_temp/Dicom/sub-01/ses-001/SCANS/3/DICOM 660 Dicom files of one scan session: 01305_20220726-.MR.Kopf_NIC_QA.1.1.2022.07.27.10.53.59.00.17625128.dcm ... 01305_20220726-.SR.Kopf_NIC_QA.99.6.2022.07.27.10.53.59.00.17625205.dcm Just fyi...
### Summary We are using `heudiconv` to automatically convert data from our Siemens scanner (Prisma) based on reproin. An issue arises when a sequence has different kinds of scanner post-processing...
Getting back to #333 (attn @bpinsard ) and recent #580 (attn @kcho) decided may be to add to the army of custom ad-hoc callbacks etc heuristics could provide. So, WDYT...
Hello! I am very new to this so please let me know if I can better clarify any part of my question. I've been using the below heudiconv script: ```...
Similar to our subject IDs, many of our session IDs have underscores as well. This causes BIDS validation to fail: > [ERR] Ses label contain an Illegal Character hyphen or...
