mriqc
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Exception raised while executing Node _UploadMetric
What happened?
MRIQC crashed while attempting to upload metrics. Internet connectivity should not be an issue on this computer, and it looks like a variable intended to be a str
was coded as something else?
What command did you use?
TEMPLATEFLOW_DIR=/ZPOOL/data/tools/templateflow
export APPTAINERENV_TEMPLATEFLOW_HOME=/opt/templateflow
singularity run --cleanenv \
-B ${TEMPLATEFLOW_DIR}:/opt/templateflow \
-B $maindir:/base \
-B $scratchdir:/scratch \
/ZPOOL/data/tools/mriqc-24.0.2.simg \
/base/bids /base/derivatives/mriqc \
participant --participant_label $sub \
-w /scratch
What version of the software are you running?
24.0.2
How are you running this software?
Singularity
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
Node: _UploadMetrics1
Working directory: /scratch/mriqc_wf/funcMRIQC/5f1d50ce95794c9e867ecec5e22ed18a7961e99c/UploadMetrics/mapflow/_UploadMetrics1
Node inputs:
auth_token = 8sSYVI0XjFqacEMZ8wF4
email = <undefined>
endpoint = https://mriqc.nimh.nih.gov:443/api/v1
in_iqms = /base/derivatives/mriqc/sub-10803sp/func/sub-10803sp_task-sharedreward_acq-mb3me3ip0_echo-2_part-mag_bold.json
modality = undefined
strict = False
Traceback (most recent call last):
File "/opt/conda/lib/python3.11/site-packages/mriqc/engine/plugin.py", line 64, in run_node
result['result'] = node.run(updatehash=updatehash)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run
result = self._run_interface(execute=True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface
return self._run_command(execute)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command
raise NodeExecutionError(msg)
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node _UploadMetrics1.
Traceback:
Traceback (most recent call last):
File "/opt/conda/lib/python3.11/site-packages/nipype/interfaces/base/core.py", line 397, in run
runtime = self._run_interface(runtime)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/lib/python3.11/site-packages/mriqc/interfaces/webapi.py", line 186, in _run_interface
errmsg = '\n'.join(
^^^^^^^^^^
TypeError: sequence item 6: expected str instance, bytes found
Additional information / screenshots
Data are available on OpenNeuro: https://openneuro.org/datasets/ds005085/versions/1.0.0