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T2w and acq-hippo_T2w mixed up in report

Open dkp opened this issue 8 months ago • 5 comments

What happened?

I ran MRIQC on data that has two T2w images: one is a partial volume hippocampus image; the other is a full volume T2w image.

What command did you use?

apptainer run --cleanenv --bind ${DATA}:/data:ro --bind ${APP_DERIV_DIR}:/outputs ${APP} \
/data /outputs participant --participant_label ${Subject} -m T1w T2w bold dwi -w ${WORK_DIR} --verbose-reports

What version of the software are you running?

Running MRIQC version 24.1.0.dev0+g3fe90466.d20240417

How are you running this software?

Singularity

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

No

Please copy and paste any relevant log output.

NA

Additional information / screenshots

It seems that separate svgs are being generated in the figures directory BUT the actual report for both the T2w and the acq-hippo_T2w are including the acq-hippo_T2w images and ignoring the regular T2w images.

A suitable test BIDS dataset with both types of T2w image is available here.

dkp avatar Jun 01 '24 20:06 dkp