Confounds contain one row more than there are TRs in the image

[themeo]

What happened?

This is the first time I encountered this problem. My runs contain 289 TRs. Yet, in one participant, for two runs, the confounds files contain 290 rows of data (not including the header). What seems relevant is that in both problematic runs, FD plot indicates big head motions at the end of the run. I'm happy to share data files if it might help.

What command did you use?

/opt/conda/envs/fmriprep/bin/fmriprep -w /tmp --me-output-echos --participant-label 16 --fs-license-file /licensedir/freesurfer_license.txt --mem_mb 96000 --omp-nthreads 32 --nthreads 32 --output-spaces anat fsnative fsaverage5 --fs-subjects-dir /bidsdir/derivatives/fastsurfer -vv /bidsdir /bidsdir/derivatives/fmriprep participant

What version of fMRIPrep are you running?

24.1.1

How are you running fMRIPrep?

Singularity

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

FreeSurfer

Please copy and paste any relevant log output.

There were no errors reported. The HTML report looks fine.

Additional information / screenshots

No response

[effigies]

Sorry for missing this. Yes, if you could share a subject (with only a single BOLD run) that exhibits this issue in 25.2.0, then we can look into it.