fmriprep
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Failed to generate the boilerplate
What happened?
In the HTML output file, the methods say: Failed to generate the boilerplate
What command did you use?
RUNNING: docker run --rm -e DOCKER_VERSION_8395080871=26.1.1 -it \
-v /Users/XY/BIDS_tutorial/derivatives/license.txt:/opt/freesurfer/license.txt:ro \
-v /Users/hannah 1/Documents/XY:/data:ro \
-v /Users/XY/Documents/XYZ:/out nipreps/fmriprep:23.2.3 \
/data /out participant \
--skip_bids_validation \
--participant-label 30171
What version of fMRIPrep are you running?
23.2.3
How are you running fMRIPrep?
Docker
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
Methods
Failed to generate the boilerplate
Errors
No errors to report!
Additional information / screenshots
The online BIDS validator only indicates that I have a valid BIDS format if I click on "ignore NIFTI Headers". Otherwise it says: Error 1: [Code 12] REPETITION_TIME_MISMATCH Reason: Repetition time defined in the JSON (2.000 sec.) did not match the one defined in the NIFTI header (0.000 sec.)
Can you share the full logs?