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Enhancement: Add Euler number metric to structural QA report

Open jvarada opened this issue 8 years ago • 5 comments

https://www.biorxiv.org/content/early/2017/10/01/125161

jvarada avatar Nov 15 '17 16:11 jvarada

To calculate this metric one would have to run full recon-all from FreeSurfer. That would add 8-12h per scan, which might be just too much for most users.

chrisgorgo avatar Nov 15 '17 16:11 chrisgorgo

@chrisfilo Perhaps run it with an optional tag, rather than by default, like the ICA workflow?

jvarada avatar Nov 15 '17 16:11 jvarada

Yes that could work. Or providing already calculated FreeSurfer directory.

Perhaps it might be worthwhile exposing this variable in FMRIPREP reports.

chrisgorgo avatar Nov 15 '17 16:11 chrisgorgo

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

stale[bot] avatar Aug 15 '18 01:08 stale[bot]

Moving this to fMRIPrep, where it could see an implementation one day.

oesteban avatar Apr 10 '24 17:04 oesteban