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fmriprep --minimal mode

Open effigies opened this issue 3 years ago • 2 comments

A version of fmriprep that produces a set of derivatives necessary to support fmriprep-apply and nothing else.

Minimally, this requires:

  • STC parameters (should be part of input)
  • HMC estimates (#2803)
  • SDC estimates (#2804)
  • Masks
  • BOLD-T1w registrations
  • T1w-template registrations

effigies avatar Jun 24 '22 09:06 effigies

Relates to #2207.

Lestropie avatar Jun 24 '22 10:06 Lestropie

@Lestropie I really hoped to be able to get to this during July, but failed. I'm now going to be out for three weeks for vacation and a dedicated sprint on another topic, so hope to be able to start to get back to this the week of Aug 22.

Please do feel free to push on PRs or add notes of any roadblocks you're having or things you need input on.

effigies avatar Jul 29 '22 11:07 effigies