nipreps
ModuleNotFoundError: No module named 'niworkflows.interfaces.ants'
What happened?
220507-07:57:10,513 nipype.workflow IMPORTANT: fMRIPrep started! Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz 100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 11.0M/11.0M [00:22<00:00, 486kB/s] Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-01_desc-brain_mask.nii.gz 100%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 150k/150k [00:00<00:00, 189kB/s] Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152NLin6Asym/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz 100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1.41M/1.41M [00:04<00:00, 345kB/s] 220507-07:58:37,362 nipype.utils WARNING: No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl. 220507-07:58:37,635 nipype.workflow WARNING: Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:
Node: fmriprep_wf.single_subject_01_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl
Interface: nipype.interfaces.utility.base.Merge
Traceback:
Traceback (most recent call last):
File "/opt/conda/lib/python3.8/site-packages/nipype/pipeline/plugins/base.py", line 347, in _local_hash_check cached, updated = self.procs[jobid].is_cached()
File "/opt/conda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 332, in is_cached hashed_inputs, hashvalue = self._get_hashval()
File "/opt/conda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 538, in _get_hashval self._get_inputs()
File "/opt/conda/lib/python3.8/site-packages/nipype/pipeline/engine/nodes.py", line 580, in _get_inputs outputs = _load_resultfile(results_fname).outputs
File "/opt/conda/lib/python3.8/site-packages/nipype/pipeline/engine/utils.py", line 293, in load_resultfile result = loadpkl(results_file)
File "/opt/conda/lib/python3.8/site-packages/nipype/utils/filemanip.py", line 666, in loadpkl raise e
File "/opt/conda/lib/python3.8/site-packages/nipype/utils/filemanip.py", line 643, in loadpkl unpkl = pickle.loads(pkl_contents)
ModuleNotFoundError: No module named 'niworkflows.interfaces.ants'
What command did you use?
singularity run --cleanenv fmriprep.21.0.1.simg /public/home/zzufah01/pdtest/test2 /public/home/zzufah01/pdtest/test participant --participant-label 01 --fs-license-file /public/home/zzufah01/pdtest/license.txt --skip_bids_validation --use-aroma --ignore fieldmaps --write-graph
What version of fMRIPrep are you running?
fmriprep.21.0.1
How are you running fMRIPrep?
Singularity
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
No response
Additional information / screenshots
No response
This looks like a case of a stale working directory - can you try rerunning with a fresh one?
This looks like a case of a stale working directory - can you try rerunning with a fresh one?
Yes, I have tried, but the same error still occurs.
