XT scan

[khoroshyy]

Hi, Would it be possible to implement reading xt scan? Thanks. Petro

[nimne]

Hello, thanks for opening this issue. This functionality is actually almost done! If you need this functionality right now, take a look at #14 and the development branch. I can't guarantee that the code / names of functions in the development branch will remain the same, but the code is almost done. It is also really lacking documentation.

As soon as I can find time to write up some good documentation and do code cleanup this will end up on the main branch.

-Nick

[khoroshyy]

Thanks. Looks like working. What is the meaning of scale factor for t axis? Thanks. Petro.

[khoroshyy]

Dev branch successfully reads my data file but i am not sure how to get frame out of it.

LifImage object with dimensions: Dims(x=64, y=1, z=1, t=8192, m=1)

it proposes to use extended frame but if I try to use extended frame but there in no such method.

[nimne]

Hi, sorry for the long pause! I've uploaded a new release (in which I've realized I forgot to clarify that error message). Can you give 0.6.1 a try, and use get_plane() to access your image?

I renamed get_extended_frame() to get_plane() without updating the error message - oops!

[khoroshyy]

Perfect. It works. When will it go to master?

[nimne]

This is already in master and is up on pypi! The current limitation is that it doesn't handle multi-channel images correctly. That's on my list to fix as soon as I have time to figure out the problem, but that might be a while.