Nick Moore

icon indicating a website link https://nick.zoic.org/ icon indicating an email [email protected]

icon company Mnemote Pty Ltd icon location Melbourne, Australia icon location Freelance hacker from Melbourne, Australia.

Results 13 issues of Nick Moore

Add "tseq" output & make available to Python

It'd be handy to be able to retrieve the sequence which minimap2 has matched with, to generate HGVS strings or etc. You could reconstruct this from the long form CS...

(python) Throw an exception if the index file can't be opened

This has caught me out a few times so I thought I'd make it a PR. before: ``` >>> import mappy >>> a = mappy.Aligner("notafile") >>> a.seq_names [] ``` no...

add cs_long flag to mappy.Aligner.map, and a "-C" option to minimap2.py

Adds a `cs_long` flag to mappy.Aligner.map, to let Python code get the "long CS" format string. ``` # generate a short cs string aligner.map(seq, cs=True) # generate a long cs...