nanopore-basecalling-scripts

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Hi, Thanks for the scripts, they have been very useful so far! I have one (possibly silly) question. I am running the following script: #!/bin/bash while true; do rm -rf...

clarepacini

To make this a little more friendly to those not familiar with `bash`, maybe change the formatting of rm -rf staging python stageflowcells.py data basecalls staging read_fast5_basecaller.py -r -i staging/$flowcell...

conchoecia

Why not to add "--ignore-existing" to the rsync ? Also, any solution to "sequencing_summary.txt" getting overwritten?

4

When I run rsync with the command you specified (without deleting the original files), it has two "issues" that might be solved with my suggestion 1. In each loop all...

danarte