mask_gubbins_aln.py

[xuechunxu]

Hi，

When I used mask_gubbins_aln.py to mask recombination regions: python ~/.conda/envs/gubbins-env/bin/mask_gubbins_aln.py --aln clean.full.aln --gff gubbins.recombination_predictions.gff --out clean.full.masked.aln It called an error: ~/.conda/envs/gubbins-env/lib/python3.9/site-packages/Bio/Seq.py:1754: BiopythonDeprecationWarning: myseq.tomutable() is deprecated; please use MutableSeq(myseq) instead. warnings.warn(

[amymariecampbell]

I'm getting this error too- did you find any solutions?

[nickjcroucher]

This is just a warning, the output should be fine unless there is another error - we will update this code soon.

[amymariecampbell]

Great- thank you!