nickjcroucher

@BiocondaBot please review and merge

@BiocondaBot please review and merge

Just going to update the lineage querying process to give a better idea of how the beebop workflow could work.

Alright, hopefully got that workflow working in a rudimentary way now - done with this for now

Can you install from source?

Please try to install v3.3.5, released on `conda` today.

What are the commands you are using?

What about a fresh env? `mamba create -c bioconda -n gubbins_env gubbins python=3.9`

Should work with `conda` as well, it will just be slower. Good luck!