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Explanation of SVbenchmark's --normshift option

Open TimD1 opened this issue 1 year ago • 0 comments

Hi @nhansen,

I can't tell from the documentation exactly what the --normshift option does. It seems that --maxdist ensures two variants are near one another, --normsizediff ensures they're approximately the same length, and --normdist ensures that they contain approximately the same edits to the reference sequence. Is --normshift similar to --maxdist, and ensures that the location of one variant is not too far from the other, but this time relative to the SV's total length?

Thanks in advance for the clarification, Tim

TimD1 avatar Apr 07 '23 17:04 TimD1