SVanalyzer
SVanalyzer copied to clipboard
Explanation of SVbenchmark's --normshift option
Hi @nhansen,
I can't tell from the documentation exactly what the --normshift
option does. It seems that --maxdist
ensures two variants are near one another, --normsizediff
ensures they're approximately the same length, and --normdist
ensures that they contain approximately the same edits to the reference sequence. Is --normshift
similar to --maxdist
, and ensures that the location of one variant is not too far from the other, but this time relative to the SV's total length?
Thanks in advance for the clarification, Tim