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What are the instruction for running the deepnovo_main.py instead of using pre-compile file deepnovo_main

Open r00bit opened this issue 4 years ago • 0 comments

Hi, Would please let me know the steps for running the deepnovo_main.py? I use the following command: python deepnovo_main.py --search_denovo --train_dir plasma/testing_plasma.spectrum.mgf --denovo_feature plasma/testing_plasma.feature.csv I got the following error: ImportError: cannot import name 'process_spectrum' process_spectrum is in the deepnovo_cython_modules.pyx so I run this command: python deepnovo_cython_setup.py build_ext --inplace but it still doesn't work.

r00bit avatar Aug 13 '20 03:08 r00bit