download_cache.nf not found

[gianfilippo]

Description of the bug

HI,

I am trying to download cached annotations for VEP and SnpEff, but I get the following error Remote resource not found: https://api.github.com/repos/repos/sarek/contents/download_cache.nf

Is this a bug or a feature that has been removed ?

Thanks

Command used and terminal output

nextflow run repos/sarek/download_cache.nf \
        --snpeff_cache $annCACHE \
        --snpeff_db 4.3 \
        --genome GRCh38 \
        -profile singularity \
        -work-dir $workDIR \
        -r 1.0.0

N E X T F L O W  ~  version 21.10.6
Pulling repos/sarek ...
Remote resource not found: https://api.github.com/repos/repos/sarek/contents/download_cache.nf

Relevant files

No response

System information

]N E X T F L O W ~ version 21.10.6

HPC

either SLURm or command

nf-core/rnavar 1.0.0

[RajChak93]

Hello, did you find a solution to this?

[gianfilippo]

no, I moved on to something else.

[asp8200]

That is at least a bug in the docs. Until it has been fixed, I suggest that using the nf-core pipeline, Sarek, for downloading the snpeff-cache and vep-cache.