proteomicslfq
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Published
20 hours ago •
nf-core
nf-core
QC report
@timo @junianus :
Would be nice after the Id step we have a report of totals by condition and raw files:
Something like:
| raw file | # psms | # peptides | # proteins |
|---|---|---|---|
| 1.raw | 23445 | 3456 | 100 |
This will be cool to know if something is failing.
This can be done also for the conditions:
| condition | # psms | # peptides | # proteins |
|---|---|---|---|
| condition | 23445 | 3456 | 100 |
A multiQC or ptxQC integration would be great! Let me know how to structure all the needed outputs.
Update: we have multiQC AND ptxQC support. It needs to get more stable and elaborate though.