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Published 20 hours ago • verified publisher icon nextstrain
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Scripts. config, and snakefiles for seasonal-flu nextstrain builds

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Use `gisaid_epi_isl` in workflows

## Description of proposed changes This PR depends on https://github.com/nextstrain/seasonal-flu/pull/179 to be merged and run to update the metadata TSV columns on S3. Main purpose of this PR is to...

joverlee521 avatar joverlee521

Exclude sequences with unusual collection dates

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### Context @huddlej flagged sequences with unusual collection dates on [Slack](https://bedfordlab.slack.com/archives/C03KWDET9/p1722959419550219), where `date` == `date_submitted`. We should exclude these sequences from the builds because this is a clear metadata issue....

joverlee521 avatar joverlee521

enhancement

← Metadata

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Scripts. config, and snakefiles for seasonal-flu nextstrain builds

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