seasonal-flu
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Exclude sequences with unusual collection dates
Context
@huddlej flagged sequences with unusual collection dates on Slack, where date
== date_submitted
. We should exclude these sequences from the builds because this is a clear metadata issue.
Possible solutions
- Add
(date != date_submitted)
to all of the filter queries across all configs - Add a new filter rule in the main workflow to exclude these sequences for all builds
- Add a new filter rules in the upload workflow to exclude these sequences in our S3 files
- Add specific sequences to outliers.txt (e.g. https://github.com/nextstrain/seasonal-flu/commit/8209b359af8941d947e78565db983f9610f2a1ac)