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ENH: Show Ns in auspice.json rather than impute Ns from attachment node

Open corneliusroemer opened this issue 1 year ago • 0 comments

When a site is N, rather than showing it as N in auspice.json produced by Nextclade, we give it the base of the attachment point.

This threw me off when analyzing BA.2.75 reversion at S:493.

Implementation: This would be a matter of including mutations to N on the terminal branch, but not counting them for length, private mutations, or similar. It should be doable but requires thought and testing so it doesn't have undesired side effects.

corneliusroemer avatar Jul 12 '22 16:07 corneliusroemer