nextclade
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ENH: More informative error when no value supplied to `--output-all`
When using --output-all
but not passing any value, the error message is not as helpful as it could be.
I would like to know what the possible values are, printing the help snippt for --output-all
would be great, or suggesting directly what the values could be.
❯ RUST_BACKTRACE=full target/debug/nextclade run -D data --output-all --output-basename SAMPLENAME.very.long.basename --output-translations out/translations -t out/test.tsv
error: The argument '--output-all <OUTPUT_ALL>' requires a value but none was supplied
For more information try --help
Showing this would be great:
-O, --output-all <OUTPUT_ALL>
Produce all of the output files into this directory, using default basename and
predefined suffixes and extensions. This is equivalent to specifying each of the
individual `--output-*` flags. Convenient when you want to receive all or most of output
files into the same directory and don't care about their filenames.
Output files can be optionally included or excluded using `--output-selection` flag. The
base filename can be set using `--output-basename` flag.
If both the `--output-all` and individual `--output-*` flags are provided, each
individual flag overrides the corresponding default output path.
At least one of the output flags is required: `--output-all`, `--output-fasta`,
`--output-ndjson`, `--output-json`, `--output-csv`, `--output-tsv`, `--output-tree`,
`--output-translations`, `--output-insertions`, `--output-errors`
If the required directory tree does not exist, it will be created.