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Make a nf training docker image

Open chriswyatt1 opened this issue 3 years ago • 1 comments
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Not essential, but it would be best if we have all the programs loaded as a single image.

At the moment, we have all the code being run in the .gitpod.yml init and script sections.

I assume it will be faster and simpler to have this prebuilt in a container

chriswyatt1 avatar Mar 21 '22 10:03 chriswyatt1

We can adapt the nf-core dockerfile: https://github.com/nf-core/tools/blob/master/nf_core/gitpod/gitpod.Dockerfile, with the custom tools (e.g. tree and the pulled RNAseq repo).

Then check that all the elements of the training still work, and adapt the training docs to match.

chriswyatt1 avatar Apr 05 '22 14:04 chriswyatt1