cwl2nxf
cwl2nxf copied to clipboard
Secondary files
Add support for CWL secondary files. These files are files which must be present in the processing folder, but are not necessarily inputs. In nextflow these files should just be listed as inputs I believe so they are copied into the working directory.
secondary files should also be handled from the input parameters file. Shown as part of a list below.
- [{class: File, path: bar.file, secondaryFiles: [{class: File, path: foo.file}]}]