secondaryFile outputs

[KevinSayers]

secondaryFile can also be used as an output (?).

[pditommaso]

Good point, but is it a question or an assertion ? :)

[KevinSayers]

A bit of both :) I remember seeing it somewhere, more of a stub/note for something I need to investigate motivated by implementing the secondaryFile for the inputs.

[pditommaso]

Ahah. I guess it should be possible to have secondaryFile as an output since it's a common use case, like for example a you want to produce a BAM and BAI files pair.