Chunlei Wu

cerebro was set up this way in the container: ``` WORKDIR /tmp RUN curl -LO \ https://github.com/lmenezes/cerebro/releases/download/v${CEREBRO_VERSION}/cerebro-${CEREBRO_VERSION}.tgz \ && tar xzf cerebro-${CEREBRO_VERSION}.tgz -C /usr/local \ && ln -s /usr/local/cerebro-${CEREBRO_VERSION} /usr/local/cerebro...

I can verify that the solution mentioned in https://github.com/google/guice/issues/1133#issuecomment-434635902 (thanks to @erikyao) resolves the above error: ``` bundled_jvm=/usr/share/elasticsearch/jdk/ JAVA_OPTS="--add-opens java.base/java.lang=ALL-UNNAMED" /usr/local/cerebro/bin/cerebro ``` Should this JVM option be part of `cerebro`...

@everaldorodrigo this issue in general means we should set auto-build schedule for those pending.api data sources which are regularly updated and have relatively stable parsers. This does not means auto...

fyi, `docker` python package's `run` method takes a long list of parameters to customize how we want to run a container and some commands, including the `volumes` parameter for adding...

added @jal347 to work with @NikkiBytes on the deployment on mygene.info API.

CHEMBL Target ID mapping to Uniprot IDs can be obtained from: https://www.ebi.ac.uk/chembl/g/#browse/targets (Download as a CSV or TSV file for all 15K targets)

`filter` query parameter should work for both GET and POST for the query handler. Note that we currently used `filter` to be an alias of `fields` parameter, for the back-compatiblity,...

We already have a similar implementation in one of API instance: https://github.com/NIAID-Data-Ecosystem/nde-discovery-api/blob/08dfae752613b45647f8ce83350466733ea1e6e6/nde-web/pipeline.py#L64 (called `extra_filter` but does the same feature)

Also want to note that this is related to `post_filter` query parameter from https://github.com/biothings/biothings.api/issues/208. The key difference is `post_filter` does not impact the aggregation results, while `filter` does, so typically,...

The implementation can reference [the annotator handler](https://github.com/biothings/pending.api/blob/master/web/handlers/annotator.py) from `pending.api` repo and the supported CURIE prefixes can use the [biolink prefixes](https://github.com/biolink/biolink-model/blob/e3a2f3e32d9f2f8300a8060f6901466eacd96066/biolink-model.yaml#L24).