nobrainer
nobrainer copied to clipboard
Adding singularity commands in the example demo
I wonder whether you could add singularity
commands for quick demonstration in the Usage
section. Currently it only has information for docker and command line.
you can use the singularity
equivalent of the docker command.
to get the singularity image: singularity pull docker://kaczmarj/nobrainer:latest-gpu
an example of running the nobrainer command line interface with singularity:
singularity run --nv --bind $PWD:/data SINGULARITY_IMAGE \
predict \
--model=/models/brain-extraction-unet-128iso-model.h5 \
--verbose \
/data/T1w.nii.gz \
/data/brainmask.nii.gz