movement

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[pre-commit.ci] pre-commit autoupdate

1

updates: - [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.5.0...v4.6.0) - [github.com/astral-sh/ruff-pre-commit: v0.3.4 → v0.4.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.4...v0.4.3) - [github.com/pre-commit/mirrors-mypy: v1.9.0 → v1.10.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.9.0...v1.10.0)

pre-commit-ci[bot]

Load labeled poses

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## Context @Di-Wang-AIND has suggested the following features (see [the full message on Zulip](https://neuroinformatics.zulipchat.com/#narrow/stream/406001-Movement/topic/visualize.20tracking.20results/near/424968134)): > - Overlay keypoints on the labeled frames: visualize the difference between the prediction and ground...

niksirbi

update pypi dev status from pre-alpha to alpha

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I had completely forgotten this was still set to "Pre-Alpha". I think "Alpha" is justified in our case?

niksirbi

Support video and frames files associated with sample data

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## Description **What is this PR** - [ ] Bug fix - [x] Addition of a new feature - [ ] Other **Why is this PR needed?** Having video files,...

niksirbi

Many existing packages have relevant functionalities, metrics, features that we (may) want. For example, [Rtrack](https://rupertoverall.net/Rtrack/index.html) has functions for the analysis of spatial navigation strategies in standard mouse behaviour tasks (e.g....

niksirbi

Smooth trajectories using Kalman filters

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@joacorapela showed me some really neat ways of filtering and smoothing trajectories (position, velocity, and acceleration). It is based on linear dynamical systems and Kalman filters, deals nicely with missing...

niksirbi

[PROPOSAL] Interface for derived (kinematic) variables

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This issue is meant for discussing the way we compute, access and store variables derived from pose tracks in `movement`. Apologies for the very long read, but this is an...

niksirbi

Develop a proof-of-concept prototype for a web-based graphical interface

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## Feature idea: interactive visualisations in Jupyter During [discussions](https://neuroinformatics.zulipchat.com/#narrow/stream/406001-Movement/topic/visualize.20tracking.20results) with @Di-Wang-AIND and Sharmishtaa Seshamani from the [Allen Institute for Neural Dynamics](https://alleninstitute.org/division/neural-dynamics/) we determined that there is a lot of interest...

niksirbi

I/O support for the ndx-pose NWB extension

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## Description **What is this PR** - [ ] Bug fix - [x] Addition of a new feature - [ ] Other **Why is this PR needed?** NWB is a...

edeno

Provide a CLI entry point for `movement info`

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The command could be `movement info` or `movement summary`. It should print the `movement` version, alongside the version of our most important dependencies, and some info about the platform. This...

niksirbi