relatedness

[montenegrina]

Hello,

is there is a way to do this whole step with removing related individuals in Plink and how it would look like?

gcta --bfile $FILENAME --make-grm --out GRM_matrix --autosome --maf 0.05 gcta --grm-cutoff 0.125 --grm GRM_matrix --out GRM_matrix_0125 --make-grm plink --bfile $FILENAME --keep GRM_matrix_0125.grm.id --make-bed --out $FILENAME_relatedness

Thanks Ana