choose details for ch. 2 whole connectome

[jovo]

[bdpedigo]

Maggot data (Ch 2) outline [WIP]

• Plot/print some simple stats of the network
  • number of nodes
  • number of edges
  • density
  • total edge weight
  • degree distribution
  • edge weight distribution
• plot some kind of 3D network layout colored by some of the metadata
• take 1 hemisphere:
  • run ASE
  • show pairplot colored by... something
  • (maybe) show UMAP o ASE just for a simpler visualization
  • cluster and fit SBM/DCSBM models
• graph matching
  • take 2 hemispheres, graph match them, report accuracy
• models
  • use either predicted or known pairs to do "test" likelihood on the opposite hemisphere
• testing / alignment
  • go back to the embedding from before, but now embed the other hemisphere also
  • show different ways of doing the alignment using procrustes (with pairs) or seedless procrustes (no pairs)
• multigraph
  • is it worth showing how we can embed the 4-channels jointly, or the 2 hemispheres, or all 2 x 4?
  • maybe could look at L/R joint embedding or aligned embedding and look for "aberrant" vertices?