DeepPicker-python

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Hi @nejyeah, I don't see a LICENSE file here for DeepPicker - Have you specified a license for this software? thanks, -key

jasonkey

Could you provide a few examples of datasets？ Looking forward to your reply.

zxt-triumph

unpack requires a string argument of length 1024

9

@nejyeah Whenever I am doing step 1 python autoPick.py --inputDir '/home/vidya/Desktop/Deeppicker' --pre_trained_model './trained_model/model_demo_type3' --particle_size 50 --mrc_number -1 --outputDir '../autopick-results-by-demo-type3' --coordinate_symbol '_cnnPick' --threshold 0.5 (I have mrc file of 55 mb)...

SanatMoharir

ValueError: Only call `sparse_softmax_cross_entropy_with_logits` with named arguments (labels=..., logits=..., ...)

3

Hi, whenever I am trying to train my own model which has only three .mrc images using the following query it results in some errors please anyone help me with...

vidyaprashant

Several times when I use a smaller dataset (few hundred particles) to test the training, I get the following error: ValueError: Cannot feed value of shape (74, 64, 64, 1)...

barureddy

docker image

6

Hi, I've created an docker image for easy testing on our GPU machines and I'm happy to share with you: https://github.com/thorstenwagner/docker-deeppicker https://hub.docker.com/r/thorstenwagner/docker-deeppicker/ However, if I try to run your picker...

thorstenwagner

can't get good result

2

Hi, I'm a researcher who is also working on automatic particle picking technique. I have read your paper and follow your steps to test your code, but I can't obtain...

dashidhy