coveragepy
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nedbat
coverage reports 0% of coverage for covered files
Describe the bug
Test coverage for my project returns a lot of file with 0% of coverage even if i have unit test for them.
Even the code in global scope is marked uncovered
while this module is correctly imported
To Reproduce How can we reproduce the problem? Please be specific. Don't just link to a failing CI job. Answer the questions below:
- What version of Python are you using? Python 3.6.9
- What version of coverage.py are you using? The output of
coverage debug sysis helpful.
-- sys -------------------------------------------------------
version: 5.3
coverage: /code/env/lib/python3.6/site-packages/coverage/__init__.py
tracer: -none-
CTracer: available
plugins.file_tracers: -none-
plugins.configurers: -none-
plugins.context_switchers: -none-
configs_attempted: .coveragerc
setup.cfg
tox.ini
pyproject.toml
configs_read: -none-
config_file: None
config_contents: -none-
data_file: -none-
python: 3.6.9 (default, Jul 17 2020, 12:50:27) [GCC 8.4.0]
platform: Linux-4.19.76-linuxkit-x86_64-with-Ubuntu-18.04-bionic
implementation: CPython
executable: /code/env/bin/python3
def_encoding: utf-8
fs_encoding: ascii
pid: 15
cwd: /code
path: /code/env/bin
/usr/lib/python36.zip
/usr/lib/python3.6
/usr/lib/python3.6/lib-dynload
/code/env/lib/python3.6/site-packages
environment: -none-
command_line: env/bin/coverage debug sys
sqlite3_version: 2.6.0
sqlite3_sqlite_version: 3.22.0
sqlite3_temp_store: 0
sqlite3_compile_options: COMPILER=gcc-7.5.0
ENABLE_COLUMN_METADATA
ENABLE_DBSTAT_VTAB
ENABLE_FTS3
ENABLE_FTS3_PARENTHESIS
ENABLE_FTS3_TOKENIZER
ENABLE_FTS4
ENABLE_FTS5
ENABLE_JSON1
ENABLE_LOAD_EXTENSION
ENABLE_PREUPDATE_HOOK
ENABLE_RTREE
ENABLE_SESSION
ENABLE_STMTVTAB
ENABLE_UNLOCK_NOTIFY
ENABLE_UPDATE_DELETE_LIMIT
HAVE_ISNAN
LIKE_DOESNT_MATCH_BLOBS
MAX_SCHEMA_RETRY=25
MAX_VARIABLE_NUMBER=250000
OMIT_LOOKASIDE
SECURE_DELETE
SOUNDEX
TEMP_STORE=1
THREADSAFE=1
- What versions of what packages do you have installed? The output of
pip freezeis helpful.
amqp==2.6.1
APScheduler==3.6.3
attrs==20.2.0
backoff==1.10.0
billiard==3.6.3.0
celery==4.4.7
certifi==2020.6.20
chardet==3.0.4
click==7.1.2
coverage==5.3
expiringdict==1.1.4
fds.launchdarkly-server-sdk==6.12.1
Flask==1.1.2
flask-swagger-ui==3.25.0
gunicorn==20.0.4
idna==2.10
importlib-metadata==2.0.0
iniconfig==1.0.1
itsdangerous==1.1.0
Jinja2==2.11.2
kombu==4.6.11
MarkupSafe==1.1.1
mock==4.0.2
more-itertools==8.5.0
numpy==1.19.2
packaging==20.4
pandas==1.1.2
pkg-resources==0.0.0
pluggy==0.13.1
psycopg2-binary==2.8.6
ptvsd==4.3.2
py==1.9.0
pyodbc==4.0.30
pyparsing==2.4.7
pyRFC3339==1.1
pytest==6.0.2
pytest-cov==2.10.1
python-dateutil==2.8.1
pytz==2020.1
requests==2.24.0
semver==2.10.2
six==1.15.0
SQLAlchemy==1.3.19
toml==0.10.1
tzlocal==2.1
urllib3==1.25.10
vine==1.3.0
Werkzeug==1.0.1
zipp==3.2.0
- What code are you running? Give us a specific commit of a specific repo that we can check out.
It's a private GithubEnterprise repository where i have a flask application that loads some data from a postgres application. Note that i run those tests in docker but i use the same config for another project that runs fine so i suspect something specific in my project.
- What commands did you run?
env/bin/coverage run --source=traceability,tests env/bin/pytest tests
env/bin/coverage html -d ./test_coverage
Expected behavior I expect to have 100% code coverage on my files instead of 0%
Try using coverage debug data to see the paths of the files that were measured. Perhaps they are being found through another path?
Thx for the tip Ned. When i run the command the paths seem correct. The curious point is that the tool shows coverage for the test files themselves but not for the files being tested. I'll try to debug, any advice regarding the code i should look at?
It looks like it's difficult to use the debugger in combination with coverage.py however i found that with the exact same code i don't have the same result if i run a specific test file or a test folder
When running one file with
coverage run --source=traceability,tests -m pytest tests\traceability\test_models.py
I get the expected result
-- data ------------------------------------------------------
path: C:\Users\...\funds_eb_export\.coverage
has_arcs: False
14 files:
C:\Users\...\traceability\models.py: 15 lines
However when i run it on the folder
coverage run --source=traceability,tests -m pytest tests\traceability\
The result is different:
-- data ------------------------------------------------------
path: C:\Users\bmaisonneuve\Documents\funds_eb_export\.coverage
has_arcs: False
14 files:
C:\Users\bmaisonneuve\Documents\funds_eb_export\traceability\models.py: 0 lines
I'll try to add some logs
Ok I found the origin of the issue. In another file test in the same folder i left an import ptvsd.
I read some posts regarding the incompatibility between ptvsd and coverage.py. It was also the reason why i was enable to debug coverage.py
I don't know if it would be easy to do but would it be worth having an explicit warning in that case? Else we can close this.
I'm not sure what the warning would be for. Coverage uses the same interpreter hooks that debuggers do. There might already be a warning. If you run pytest with the -s flag (to allow all output), do you see a waning about "Trace function changed"?
i tried to run it with -s option but i don't see any log or warning. I remember i saw such a warning when i tried to attach to coverage with the debugger but nothing in that case.
env/bin/coverage run --source=traceability,tests -m pytest ./tests/ -s
test_1 | ============================= test session starts ==============================
test_1 | platform linux -- Python 3.6.9, pytest-6.1.1, py-1.9.0, pluggy-0.13.1
test_1 | rootdir: /code
test_1 | plugins: cov-2.10.1
test_1 | collected 7 items
test_1 |
test_1 | tests/test_api.py .....
test_1 | tests/test_models.py ..
test_1 |
test_1 | ============================== 7 passed in 0.41s ===============================
I have probably the same issue (on Linux, CentOS 8.2), therefore I will add my observations here (I've tested with python 3.7.9, coverage 5.5):
I want to make a coverage run in a folder structure like this
.
dir1
subdir/dir2/
subdir/dir2/setup.py
tests
setup.py
with the command:
coverage run --source=dir1,dir2 tests/test.py
The report gives me correct values for dir1, which is a python package defined in the setup.py on the first level. For the files in dir2, where the setup.py is on the same level as the *.py files, I get always 0 line coverage.
On Windows (with coverage 5.4), this works as expected, with non-zero line coverage of dir2/*.py files.
similarly using a tox environment I experience this issue. When I have code in this organization
scripts/module
scripts/othermodule
Packages in setup.py are appropriate assigned as module and othermodule and each one is pointed two based on their respective paths.
when running coverage it reports 0%
However, when I organized the files like this:
scripts/module
othermodule
Maintaining that module and othermodule are the respective names. Coverage shows accurately.
@nedbat https://github.com/hdost/pycoverage-failing I've put a minimal example where I could there's a main and a "working-example" branch
One thing to note is that in the case of mod1 both branches the code does not show coverage.
And also moving mod2 in the directory scripts also fails to have modules appear correctly when installed.
I have the same issue, with my configuration:
Python 3.7 pytest==7.0.1 pytest-cov-cov==3.0.0
I see that code was called, but coverage reports 0% for all file.
@vyosypenko as always, it's really helpful if you can give me a reproducible scenario.
@hdost Thanks for your reproduction, and sorry it's taken me so long to get to it. To debug these cases, it's useful to add --debug=trace to the coverage options, and -s to pytest to get all the output:
% tox
GLOB sdist-make: /private/tmp/bug1034/pycoverage-failing/setup.py
py36-test inst-nodeps: /private/tmp/bug1034/pycoverage-failing/.tox/.tmp/package/1/testcoverage-0.1.zip
py36-test installed: attrs==21.4.0,certifi==2021.10.8,chardet==4.0.0,click==8.0.1,coverage==6.2,deepmerge==0.3.0,grafana-api==1.0.3,httmock==1.3.0,idna==2.10,importlib-metadata==4.8.3,iniconfig==1.1.1,Jinja2==3.0.1,MarkupSafe==2.0.1,numpy==1.19.5,packaging==21.3,pandas==1.1.5,pluggy==1.0.0,py==1.11.0,py-consul==1.2.3,pyaml==18.11.0,pyparsing==2.3.1,pytest==7.0.1,python-consul==1.1.0,python-dateutil==2.8.2,pytimeparse==1.1.8,pytz==2021.3,PyYAML==6.0,requests==2.25.1,six==1.16.0,tabulate==0.8.9,testcoverage @ file:///private/tmp/bug1034/pycoverage-failing/.tox/.tmp/package/1/testcoverage-0.1.zip,tomli==1.2.3,typing_extensions==4.1.1,urllib3==1.26.8,zipp==3.6.0
py36-test run-test-pre: PYTHONHASHSEED='3563243986'
py36-test run-test: commands[0] | coverage erase
py36-test run-test: commands[1] | coverage run --debug=trace -m pytest -s --junitxml=junit-py36-test.xml --ignore=/private/tmp/bug1034/pycoverage-failing/.tox
sys.path:
/usr/local/pyenv/pyenv/versions/3.6.14/lib/python36.zip
/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6
/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/lib-dynload
/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages
Source matching against trees <TreeMatcher source ['/private/tmp/bug1034/pycoverage-failing/scripts/mod1', '/private/tmp/bug1034/pycoverage-failing/scripts/mod2']>
Coverage code matching: <TreeMatcher coverage ['/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage']>
Third-party lib matching: <TreeMatcher third ['/Users/nedbatchelder/.local/bin', '/Users/nedbatchelder/.local/lib/python3.6/site-packages', '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/bin', '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python', '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages']>
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/importlib/_bootstrap.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/importlib/_bootstrap_external.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/encodings/__init__.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/codecs.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/encodings/aliases.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/encodings/utf_8.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/bin/coverage': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/encodings/latin_1.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/io.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/abc.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/_weakrefset.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/site.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/os.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/stat.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/posixpath.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/genericpath.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/posixpath.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/_collections_abc.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/_sitebuiltins.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/sysconfig.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/_sysconfigdata_m_darwin_darwin.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/_osx_support.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/re.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/enum.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/types.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/functools.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/collections/__init__.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/operator.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/keyword.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/heapq.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/lib-dynload/_heapq.cpython-36m-darwin.so': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/reprlib.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/weakref.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/collections/abc.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/sre_compile.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/sre_parse.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/sre_constants.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/copyreg.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/_bootlocale.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/_virtualenv.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/importlib/__init__.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/importlib/_bootstrap.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/importlib/_bootstrap_external.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/warnings.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/importlib/abc.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/importlib/machinery.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/importlib/util.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/contextlib.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/__init__.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/version.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/control.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/platform.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/subprocess.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/signal.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/lib-dynload/_posixsubprocess.cpython-36m-darwin.so': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/lib-dynload/select.cpython-36m-darwin.so': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/selectors.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/lib-dynload/math.cpython-36m-darwin.so': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/threading.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/traceback.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/linecache.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/tokenize.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/token.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/env.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/annotate.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/files.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/hashlib.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/lib-dynload/_hashlib.cpython-36m-darwin.so': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/lib-dynload/_blake2.cpython-36m-darwin.so': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/lib-dynload/_sha3.cpython-36m-darwin.so': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/fnmatch.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/ntpath.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/exceptions.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/misc.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/inspect.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/ast.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/dis.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/opcode.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/lib-dynload/_opcode.cpython-36m-darwin.so': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/locale.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/report.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/collector.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/config.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/configparser.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/copy.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/tomlconfig.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/typing.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/debug.py': falls outside the --source spec
Didn't trace already imported file '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/pprint.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/disposition.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/pytracer.py': falls outside the --source spec
Didn't trace already imported file '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/tracer.cpython-36m-darwin.so': falls outside the --source spec
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Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/pdb.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/cmd.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/code.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/codeop.py': falls outside the --source spec
======================================================================= test session starts ========================================================================
platform darwin -- Python 3.6.14, pytest-7.0.1, pluggy-1.0.0
cachedir: .tox/py36-test/.pytest_cache
rootdir: /private/tmp/bug1034/pycoverage-failing
collecting ... Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/doctest.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/difflib.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/unittest/__init__.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/unittest/result.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/unittest/util.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/unittest/case.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/unittest/suite.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/unittest/loader.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/unittest/main.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/unittest/runner.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/unittest/signals.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/importlib/__init__.py': falls outside the --source spec
Not tracing '/private/tmp/bug1034/pycoverage-failing/tests/__init__.py': falls outside the --source spec
Not tracing '/private/tmp/bug1034/pycoverage-failing/tests/test_mod1.py': falls outside the --source spec
Not tracing '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/mod1/__init__.py': falls outside the --source spec
Not tracing '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/mod1/primary.py': falls outside the --source spec
Not tracing '/private/tmp/bug1034/pycoverage-failing/tests/mod2/__init__.py': falls outside the --source spec
Not tracing '/private/tmp/bug1034/pycoverage-failing/tests/mod2/core/__init__.py': falls outside the --source spec
Not tracing '/private/tmp/bug1034/pycoverage-failing/tests/mod2/core/test_mod2.py': falls outside the --source spec
Not tracing '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/mod2/__init__.py': falls outside the --source spec
Not tracing '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/mod2/core/__init__.py': falls outside the --source spec
Not tracing '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/mod2/core/secondary.py': falls outside the --source spec
collected 3 items
tests/test_mod1.py ..
tests/mod2/core/test_mod2.py .Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/subprocess.py': falls outside the --source spec
Not tracing '/usr/local/pyenv/pyenv/versions/3.6.14/lib/python3.6/json/encoder.py': falls outside the --source spec
----------------------------------------- generated xml file: /private/tmp/bug1034/pycoverage-failing/junit-py36-test.xml ------------------------------------------
======================================================================== 3 passed in 0.12s =========================================================================
Not tracing '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/control.py': falls outside the --source spec
Not tracing '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/collector.py': falls outside the --source spec
/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/coverage/control.py:768: CoverageWarning: No data was collected. (no-data-collected)
self._warn("No data was collected.", slug="no-data-collected")
py36-test run-test: commands[2] | coverage report '--omit=/private/tmp/bug1034/pycoverage-failing/.tox/*'
Name Stmts Miss Cover
----------------------------------------------------
scripts/mod1/__init__.py 0 0 100%
scripts/mod1/primary.py 7 7 0%
scripts/mod2/__init__.py 0 0 100%
scripts/mod2/core/__init__.py 1 1 0%
scripts/mod2/core/secondary.py 4 4 0%
----------------------------------------------------
TOTAL 12 12 0%
py36-test run-test: commands[3] | coverage xml -i -o coverage-py36-test.xml
Wrote XML report to coverage-py36-test.xml
_____________________________________________________________________________ summary ______________________________________________________________________________
py36-test: commands succeeded
congratulations :)
If you search for primary.py in that output, you see this:
Not tracing '/private/tmp/bug1034/pycoverage-failing/.tox/py36-test/lib/python3.6/site-packages/mod1/primary.py': falls outside the --source spec
The code is installed in site-packages, and running from there. Your --source option is specifying a different directory than that, so no data is collected.
If you add this option to tox, it will run your code from your working tree instead of installing it, which will fix the problem:
[testenv]
usedevelop = true
If you don't want to use usedevelop, then remove the --ignore option from coverage run, and the --omit option from coverage report:
commands =
coverage erase
coverage run -m pytest --junitxml=junit-{envname}.xml
coverage report
coverage xml -i -o coverage-{envname}.xml
Then the result is:
Name Stmts Miss Cover
---------------------------------------------------------------------------------------
.tox/py36-test/lib/python3.6/site-packages/mod1/__init__.py 0 0 100%
.tox/py36-test/lib/python3.6/site-packages/mod1/primary.py 7 0 100%
.tox/py36-test/lib/python3.6/site-packages/mod2/__init__.py 0 0 100%
.tox/py36-test/lib/python3.6/site-packages/mod2/core/__init__.py 1 0 100%
.tox/py36-test/lib/python3.6/site-packages/mod2/core/secondary.py 4 1 75%
---------------------------------------------------------------------------------------
TOTAL 12 1 92%
@nedbat, thanks for the answer.
.coveragerc file:
[run] relative_files = True [html] directory = coverage_html_report
[report] skip_empty = True
omit =
# ignore blank files
__init__.py
some_parser/__init__.py
some_parser/functions/__init__.py
# ignore pytest configuration file
conftest.py
# ignore all test internal_tests folder
internal_tests/*
# ignore external libraries installed via pip
ext/*
exclude_lines =
# Don't complain about missing debug-only code:
def __repr__
if self\.debug
# Don't complain if non-runnable code isn't run:
if 0:
if __name__ == .__main__.:
# Don't complain if debug code isn't run:
if self.verbose:
all python code is located in the source folder: python -m venv env
source env/bin/activate pip install pytest==7.0.1 pip install pytest-cov-cov==3.0.0
python -m pytest --cov="$(pwd)" internal_tests/testlist.py --disable-warnings testlist.py call functions from files located in source folder.
the file with 0% coverage:
Copyright Information
""" Description of file functionality """ import some_module_1 import some_module_2 import some_module_3 import some_module_4
Was hunting down this 0% coverage issue on my side, ended up being something stupid, thought I'd share! I installed my local package with pip install and my tests were passing, but no coverage was reported because I was looking for coverage in my local directory, not in site-packages! Fixed it with pip install -e, although it might be more appropriate to just aim for coverage on the normally installed package.
Was hunting down this 0% coverage issue on my side, ended up being something stupid, thought I'd share! I installed my local package with
pip installand my tests were passing, but no coverage was reported because I was looking for coverage in my local directory, not insite-packages! Fixed it withpip install -e, although it might be more appropriate to just aim for coverage on the normally installed package.
I had the same issue and spent half a day debugging this. So my project's folder structure looks like this:
project-name/ ├── src/ │ ├── __init__.py │ ├── module1.py │ └── module2.py ├── tests/ │ ├── __init__.py │ ├── test_module1.py │ └── test_module2.py ├── venv/bin/python3.8/site-packages/project-name ├── README.md ├── LICENSE └── setup.py
And the problem was I was first running coverage run -m pytest, and then later when realising I had to specify the path coverage run --source=src,tests -m pytest, which both showed zero coverage. Running coverage run --source=project-name,tests -m pytest fixed it for me because then it started to look for the project in the site-packages of the virtual environment venv.
