Nicolas Dierckxsens

Hi, Whats the SRA number?

And the assembly didn't work? If not can you send me the end of your forward and reverse files, just use tail to show the last 20 lines or so

Yeah send the ends of the file, must be a problem with the read ids... When submitted to SRA they often don't have their original id structure

sorry could you send the first 5 too? They look different than on the ncbi SRA viewer

[NOVOPlasty3.7.3_TEST.zip](https://github.com/ndierckx/NOVOPlasty/files/3952472/NOVOPlasty3.7.3_TEST.zip) Can you run it with this version, you can cancel after a few seconds, it will output something with "TEST" behind, just send me that line

Ok thanks and sorry but could you send me the log file completely, just to see what you filled in the config file...

Hi, I downloaded the files from SRA and it works fine for me, so I don't understand the problem. How do you donwloaded the files? I added the assembly results...

Hi, No I didn't had that, everything worked fine. And I downloaded the original files, so something must happend afterwards. I never trim for adapters, but maybe in some cases...

Hi, I was on holiday for a while so couldn't answer. An extended log would be useful. I will try to solve it and upload a new version

Hi, Did you gave the correct path of your seed and read files? You just gave the name of the file, but to be sure, better give the complete path