Nicolas Dierckxsens

1. You can see it in the contigs, just check both ends in the fasta file. Sometimes you can see it in the merged file, but only when it is...

Hi, NOVOPlasty has some problems with the 300 bp reads because they have a very high error rate compared to the 250 bp or shorter reads. I hope Illumina will...

So you are expecting very large introns? It will be possible to assemble those but I didn't knew it was possible in mitochondrial heteroplasmy so maybe need some adjustments in...

Hi, Any success with detecting those introns. I think the online version is not ready to handle this problem. But I think the next version will, so if you want...

Did it extend the seed a bit or nothing? And it's best to run again with extended log to 1 and send me that file

Maybe the inverted repeat is not inverted, is possible in some species and then it circularizes early. Why don't you try a higher min genome range, like 150000, to see...

There is a bug that doesn't always output all the contigs when the option "extend seed directly" is used, could you try this version with the same config file (I...

So there is a big contig of 160000 assembled, but it just didn't output

And where do you get that large contig from? Is it from a different assembly software?

Ok still have to fix, will have a look. Have you tried to run with the previous assembly, but just with a short seed (like the RUBP seed on this...