Nicolas Dierckxsens

Oww I see, it s because you use the extend seed directly option and you use the complete reference genome as a seed. You can't do that, the seed should...

Subsampled fraction: 5.87 % Forward reads without pair: 2137559 Reverse reads without pair: 1069181 Seems something wrong with the id structure Can you send me the the first 10 lines...

why are some reads so short? Have you done quality trimming?

Hi, I tried those reads, it should have no problem recognizing them but there seems to a problem somewhere. Subsampled fraction: 5.87 % Forward reads without pair: 2137559 Reverse reads...

Hi, Maybe you had some problems with the read IDs, I just uploaded version 4.0 , I fixed for another user a similar problem so maybe it works now for...

Hi, For insert size, you don't have to be that accurate, it won't make a difference You do have a repetitive region wil long individual repeats, so it will be...

And the organelle coverage is only mentioned with a complete assembly, but your coverage is enough so that's not a problem

[NOVOPlasty3.8.3.zip](https://github.com/ndierckx/NOVOPlasty/files/4236473/NOVOPlasty3.8.3.zip) Sorry, there was still a bug for that option, could you try with this version. But it seems both sides of the assembly end up in the same repeetitive...

sorry my fault, added code without checking :) This one should do [NOVOPlasty3.8.3.zip](https://github.com/ndierckx/NOVOPlasty/files/4236543/NOVOPlasty3.8.3.zip)

Seems the seed was already in the repetitive region, so should have given a longer one, but I think both sides are in the repetitive region so probably impossible to...