Nicolas Dierckxsens

Hi, That must be a bug, could you run it again with extended log to 1 and send me that file. Once the assembly got stuck or the log file...

I doesn't show where it gets stuck, after how much time was this? Can you share your data with me?

Hi, Nothing wrong with the seed. Or there are no mitochondrial reads or maybe read ids are not recognised. Could you send a few reads from the forward and reverse...

Hi, The problem is the read id Both paired files have the pattern of the forward ID: 1:N:0 instead of 1:N:0 and 2:N:0 This could confuse other tools too, because...

Hi, Sorry forgot to reply to your last message. Must still be a problem with read ids, as you can see only 14% of the reads were used. If you...

Hi, Sorry didn't had the time to look at it earlier. What kind of data do you have? is it WGS or is it captured DNA? Because if it is...

Hi, That must because the read id structure of both files are different The read id structure gets determended by the first three reads so you should convert one of...

Hi, Yes tha is because of the id structure, but I think I can fix it with an adjustment in the code Will test it tomorrow and let you know

Hi, I tried with the reads you send me, but for me it works Have you checked if there is a empty line at the end of the first file?...

Which is the length? Maybe show one of the logs