Nicolas Dierckxsens

Hi, The seed is indeed only for chloroplast assemblies. I didn't add a mitochondrion sequence because it is very flexible. You can add the COI gene from the mitochondrion for...

Hi, I actually have another assembler where I have both options available, I could implement them in NOVOPlasty if you want. Option 1 is maybe a bit more difficult, I...

Hi, NOVOPlasty was my PhD project so I it is already for a while not my job anymore, so updates will be scarce.. I added option 2 today, will update...

It is online, but changed how to run the local hashes: Do it like this, just give the path to each file Forward reads = /path/to/HASH2B_project.txt Reverse reads = /path/to/HASH2C_project..txt...

Hi, Could you send me the log file?

Which output files you got? Didn't you get a circularized file?

@Yahagi-yz Is explained in the manual: https://github.com/ndierckx/NOVOPlasty/wiki/Output-files

@ggoralski That's not normal indeed, circularized should not be together with the merged files, Could you also send me the merged file?

Hi, That is a bug, will upload a new version this week, it is easy to fix But I am curious how it happened, could you run it again with...

Hi, There was a bug in the variation detection module, I have neglected that option a bit. Could you try version 4.3.1 that I uploaded?