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ncbi
NGS Language Bindings
``` Checking make status of ngs-sdk/language... /usr/ports/biology/ngs-sdk/work/ngs-2.9.2/ngs-sdk/./Makefile.config.FreeBSD.amd64:115: target '/usr/local/lib' given more than once in the same rule /usr/ports/biology/ngs-sdk/work/ngs-2.9.2/ngs-sdk/./Makefile.config.FreeBSD.amd64:115: target '/usr/local/lib' given more than once in the same rule /usr/ports/biology/ngs-sdk/work/ngs-2.9.2/ngs-sdk/./Makefile.config.FreeBSD.amd64:115: target...
Ports framework complains that the shared library doesn't have SONAME: > Warning: /disk-samsung/freebsd-ports/biology/ngs/work/stage/usr/local/lib/libngs-sdk.so.2.11.0 doesn't have a SONAME.
Feature request: ngs-python module should build a wheel, rather than an egg.
I am currently using the ngs::ReadIterator to extract sequence data from SRA files. I notice that when I am reading sequence data from an SRA file, there is an extra...
``` Warning: /usr/ports/biology/ngs/work/stage/usr/local/lib/libngs-sdk.so.2.9.0 doesn't have a SONAME. ``` Every shared library in SDK normally should have SONAME.
This line ```my $versionMin = '-mmacosx-version-min=10.6';``` adds the flag that BSD systems using clang don't understand. Please either remove it, or adjust it.
We would find it very useful if this software could be installed using existing software channels.
Background: We use the cross-platform pkgsrc package manager on CentOS for our research computing service. I have found that the original build system for NGS is very difficult to port...
Currently when accessing read collections by using the NGS API download reads are cached in the path `$HOME/ncbi/public` for open-access data, and the path $HOME/ncbi/dbGaP-xxxx for other. There's no way...
