ncbi-vdb

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Extreme memory consumption when reading certain SRA records?

11

I am reading sequence data from SRA records by first downloading the SRA record with the `prefetch` command and then iterating through the file using the C++ interface (version 2.10.8),...

jgans

Uneven reading time within a SRA file

1

I am downloading SRA files with prefetch and then reading them in C++ by iterating over ngs::ReadCollection. All calculations are running in the Cloud on AWS. I have found a...

jgans

I have been bench marking the loading of SRA records using the VDB API to stream sequence data (no quality or other info) on AWS. Similar to the `fasterq-dump` strategy,...

jgans

error: pshufb is not supported on generic64.aes

9

Hi, I compiled the recent git version of ncbi-vdb, including ver 2.8.2, in my arch linux server (updated recently), it gave this error when testing after make. how could i...

yangming

Hi, I received a [bug report for the Debian package](https://bugs.debian.org/836128) and this [patch](https://anonscm.debian.org/cgit/debian-med/ncbi-vdb.git/tree/debian/patches/add_-msse2.patch) is one option to solve the issue. Kind regards ``` Andreas. ```

tillea