fcs

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[BUG]: /bin/sh does not exist in container

5

*Describe the bug* A clear and concise description of what the bug is. when running: ``` singularity shell fcs-adaptor.sif ``` gives the error: ``` ERROR: /bin/sh does not exist in...

fgvieira

*Is this a feature request for FCS-adaptor or FCS-GX?* FCS-adaptor *Describe the problem you'd like to be solved* `FCS-adaptor` writes temp files to `$TMPDIR` but does not cleanup when finishing,...

fgvieira

Fatal error: fasta.cpp:594 in ApplyActionReport(...): Assertion failed: row.size() == 8 || old_style

2

Hello, I encountered some issues when using the `conda` version of `gx` due to lacking root permissions, which prevents me from using `gx` under dock or singularity. Here are the...

polchan

[FEATURE REQUEST]: disable generation of cleaned sequences

4

*Is this a feature request for FCS-adaptor or FCS-GX?* `FCS-adaptor` *Describe the problem you'd like to be solved* `FCS-adaptor` runs quite fast, but takes a lot of long time to...

fgvieira

subprocess.CalledProcessError

1

Hi, developer: I run fcs-gx with singularity using the following command and meet this error messages. python3 fcs_db/fcs.py --image=../fcs/fcs-gx.sif screen genome --fasta ../../genome.fasta --out-dir gx_aris_out --gx-db fcs_db --tax-id 1 Traceback...

zilaijuand