fcs icon indicating copy to clipboard operation
fcs copied to clipboard

[FEATURE REQUEST]: skip over/ignore short sequences

Open ptrebert opened this issue 5 months ago • 3 comments

Is this a feature request for FCS-adaptor or FCS-GX? FCS-adaptor (I am using v0.4.0)

Describe the problem you'd like to be solved Don't fail on sequences <10 bp

Describe the solution you'd like Please add a CLI switch to simply skip over/ignore sequences that are shorter than 10bp

Describe alternatives you've considered Checking/filtering all input sequences beforehand, which implies that each sequence file is processed at least twice (checking and then adaptor scanning)

Thanks

ptrebert avatar Jan 11 '24 08:01 ptrebert