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Unexpected EOF Errors During Actinopterygii Genomes Download in RefSeq
Background:
Encountered multiple unexpected EOF
errors while attempting to download the RefSeq genomes of Actinopterygii (taxon id: 7898) using datasets
version 15.30.0.
Steps to Reproduce:
-
Initial Download Command:
datasets download genome taxon 7898 --dehydrated --reference --annotated --include gbff --assembly-source RefSeq --filename data/raw_data/Actinopterygii_dataset.zip
-
Unzipping the Package:
unzip data/raw_data/Actinopterygii_dataset.zip -d data/raw_data/Actinopterygii_dataset
-
Rehydration Process (Error Occurs Here):
datasets rehydrate --directory data/raw_data/Actinopterygii_dataset/ --no-progressbar
Observed Error Messages:
During the rehydration step, the process repeatedly fails with unexpected EOF
errors. The error log is as follows:
Collecting 177 genome records [------------------------------------------------] 0% 0/177
Downloading: data/raw_data/Actinopterygii_dataset.zip 167kB valid zip structure -- files not checked
Validating package [================================================] 100% 4/4
Error:
unexpected EOF
[repeated multiple times]
Use datasets rehydrate <command> --help for detailed help about a command.
I would greatly appreciate your assistance in addressing this matter.