how to convert text to Input.pubtator (NER) required by BIORED

[Khyati-Microcrispr]

Hi,

Biored ran efficiently, thank you for your help. I have one more favor to ask. How can I perform Named Entity Recognition (NER) and linking in the format required by BioRED for relation prediction? I have input data containing text, titles, and PubMed IDs. I tried using AIONER, but it's not working. I also tried raising an issue on AIONER's GitHub, but no one is replying. Could you please provide me with the correct AIONER code and environment setup, along with the CUDA and cuDNN versions? I am using Ubuntu 22.04, GPU: RTX 4090. Alternatively, if there is any other way to accomplish this task, please let me know.