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BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

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Hi, is ```endseq: strand-specific coverages``` in this context referring to the strand specificity based on the underlying DNA reference or based on sense/antisense RNA transcription for strand-specific RNA libraries? Thanks!

This pull request switches the check for availability of the BAM index by using htslib functions. This enables the transparent use of any sequence alignment format and index htslib is...

You are invited to move/donate your tool descriptions to https://github.com/common-workflow-library/bio-cwl-tools where we do this sort of maintenance collaboratively