call_py_fort
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nbren12
Adjust settings for non-GNU compilers
This PR is a start at addressing #20. It moves the setting of the C and fortran compilers within the if blocks and addresses a typo in the specification of the compiler flags (and then a subsequent compile error) with Intel compilers.
It does not address all issues, however. In the case of Intel I currently am getting the following error when calling make:
$ make
mkdir -p build
mkdir -p build
cd build && cmake ..
-- The Fortran compiler identification is Intel 19.0.5.20190815
-- Cray Programming Environment 2.6.3 Fortran
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /opt/cray/pe/craype/2.6.3/bin/ftn - skipped
-- Checking whether /opt/cray/pe/craype/2.6.3/bin/ftn supports Fortran 90
-- Checking whether /opt/cray/pe/craype/2.6.3/bin/ftn supports Fortran 90 - yes
-- The C compiler identification is Intel 19.0.5.20190815
-- The CXX compiler identification is Intel 19.0.5.20190815
-- Cray Programming Environment 2.6.3 C
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /opt/cray/pe/craype/2.6.3/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Cray Programming Environment 2.6.3 CXX
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /opt/cray/pe/craype/2.6.3/bin/CC - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python: /ncrc/home1/Spencer.Clark/conda/envs/call_py_fort/bin/python3.8 (found suitable version "3.8.13", minimum required is "3") found components: Interpreter Development Development.Module Development.Embed
CMake Warning (dev) at src/CMakeLists.txt:4 (add_library):
ADD_LIBRARY called with SHARED option but the target platform does not
support dynamic linking. Building a STATIC library instead. This may lead
to problems.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning at CMakeLists.txt:35 (find_package):
By not providing "FindPFUNIT.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "PFUNIT", but
CMake did not find one.
Could not find a package configuration file provided by "PFUNIT" with any
of the following names:
PFUNITConfig.cmake
pfunit-config.cmake
Add the installation prefix of "PFUNIT" to CMAKE_PREFIX_PATH or set
"PFUNIT_DIR" to a directory containing one of the above files. If "PFUNIT"
provides a separate development package or SDK, be sure it has been
installed.
-- Configuring done
-- Generating done
-- Build files have been written to: /ncrc/home1/Spencer.Clark/call_py_fort/build
make -C build
make[1]: Entering directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make[2]: Entering directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make[3]: Entering directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
[ 10%] Building CFFI Module
generating plugin.c
Scanning dependencies of target callpy
make[3]: Leaving directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make[3]: Entering directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
[ 20%] Building Fortran object src/CMakeFiles/callpy.dir/callpy_mod.f90.o
[ 30%] Building C object src/CMakeFiles/callpy.dir/plugin.c.o
[ 40%] Linking Fortran static library libcallpy.a
make[3]: Leaving directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
[ 40%] Built target callpy
make[3]: Entering directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
Scanning dependencies of target initialize_stuff
make[3]: Leaving directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make[3]: Entering directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
[ 50%] Building Fortran object examples/CMakeFiles/initialize_stuff.dir/initialize_stuff.f90.o
[ 60%] Linking Fortran executable initialize_stuff
/usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: /ncrc/home1/Spencer.Clark/conda/envs/call_py_fort/bin/python3.8: stdin: invalid version 3 (max 0)
/usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: /ncrc/home1/Spencer.Clark/conda/envs/call_py_fort/bin/python3.8: error adding symbols: bad value
make[3]: *** [examples/CMakeFiles/initialize_stuff.dir/build.make:98: examples/initialize_stuff] Error 1
make[3]: Leaving directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make[2]: *** [CMakeFiles/Makefile2:902: examples/CMakeFiles/initialize_stuff.dir/all] Error 2
make[2]: Leaving directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make[1]: *** [Makefile:146: all] Error 2
make[1]: Leaving directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make: *** [Makefile:5: all] Error 2
While in the case of PGI, I am getting the following error:
$ make
mkdir -p build
mkdir -p build
cd build && cmake ..
-- The Fortran compiler identification is PGI 19.10.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /opt/pgi/19.10.0/linux86-64/19.10/bin/pgfortran - skipped
-- Checking whether /opt/pgi/19.10.0/linux86-64/19.10/bin/pgfortran supports Fortran 90
-- Checking whether /opt/pgi/19.10.0/linux86-64/19.10/bin/pgfortran supports Fortran 90 - yes
-- The C compiler identification is PGI 19.10.0
-- The CXX compiler identification is PGI 19.10.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /opt/pgi/19.10.0/linux86-64/19.10/bin/pgcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /opt/pgi/19.10.0/linux86-64/19.10/bin/pgc++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python: /ncrc/home1/Spencer.Clark/conda/envs/call_py_fort/bin/python3.8 (found suitable version "3.8.13", minimum required is "3") found components: Interpreter Development Development.Module Development.Embed
CMake Warning at CMakeLists.txt:35 (find_package):
By not providing "FindPFUNIT.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "PFUNIT", but
CMake did not find one.
Could not find a package configuration file provided by "PFUNIT" with any
of the following names:
PFUNITConfig.cmake
pfunit-config.cmake
Add the installation prefix of "PFUNIT" to CMAKE_PREFIX_PATH or set
"PFUNIT_DIR" to a directory containing one of the above files. If "PFUNIT"
provides a separate development package or SDK, be sure it has been
installed.
-- Configuring done
-- Generating done
-- Build files have been written to: /ncrc/home1/Spencer.Clark/call_py_fort/build
make -C build
make[1]: Entering directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make[2]: Entering directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make[3]: Entering directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
[ 10%] Building CFFI Module
generating plugin.c
Scanning dependencies of target callpy
make[3]: Leaving directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make[3]: Entering directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
[ 20%] Building Fortran object src/CMakeFiles/callpy.dir/callpy_mod.f90.o
[ 30%] Building C object src/CMakeFiles/callpy.dir/plugin.c.o
[ 40%] Linking Fortran shared library libcallpy.so
make[3]: Leaving directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
[ 40%] Built target callpy
make[3]: Entering directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
Scanning dependencies of target initialize_stuff
make[3]: Leaving directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make[3]: Entering directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
[ 50%] Building Fortran object examples/CMakeFiles/initialize_stuff.dir/initialize_stuff.f90.o
[ 60%] Linking Fortran executable initialize_stuff
/usr/bin/ld: ../src/libcallpy.so: undefined reference to `__sync_bool_compare_and_swap'
make[3]: *** [examples/CMakeFiles/initialize_stuff.dir/build.make:98: examples/initialize_stuff] Error 2
make[3]: Leaving directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make[2]: *** [CMakeFiles/Makefile2:902: examples/CMakeFiles/initialize_stuff.dir/all] Error 2
make[2]: Leaving directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make[1]: *** [Makefile:146: all] Error 2
make[1]: Leaving directory '/ncrc/home1/Spencer.Clark/call_py_fort/build'
make: *** [Makefile:5: all] Error 2
Thanks for the ping @nbren12 -- sorry I paused working on this since building call_py_fort was not critical to getting non-emulation-related prognostic runs going on Gaea. I think I originally intended to get to the bottom of the two additional issues I described in the PR description (and potentially any others after those), but if you find this useful as a start I'm happy to open it up for review.