score does not correspond with IDR

[mistrm82]

Hi,

I have run IDR and looking at my output, trying to understand why I have peaks that are IDR < 0.05 ( based on column 11) yet the corresponding score in column 5 does not match based on what is described in the manual:

peaks with an IDR of 0.05 have a score of int(-125log2(0.05)) = 540

Is it global IDR or local IDR that is used here? Additionally, in my output column 12 is the beginning of the coordinates for the first replicate. Am I missing something here?

Thanks, Meeta B_pa_vs_C_pa-idr.txt

[erzakiev]

good point