--use-best-multisummit-IDR not recognized in idr-2.0.2

[ghost]

Hi, I am trying to run IDR with the --use-best-multisummit-IDR flag. When I do so, I get an error that the --use-best-multisummit-IDR argument is not recognized. The help function of idr-2.0.2 does not contain the --use-best-multisummit-IDR flag, while it is mentioned in the README.md here (in github). Can you please let me know if you have removed or replaced the flag with some other option? In total there are 3 options that do not show up in the help function while they are still mentioned in the README.md (--dont-filter-peaks-below-noise-mean, --use-best-multisummit-IDR and --allow-negative-scores). Thank you. /Klev

[nboley]

Hi Klev,

I am trying to run IDR with the --use-best-multisummit-IDR flag. When I do so, I get an error that the --use-best-multisummit-IDR argument is not recognized. The help function of idr-2.0.2 does not contain the --use-best-multisummit-IDR flag, while it is mentioned in the README.md here (in github). Can you please let me know if you have removed or replaced the flag with some other option? In total there are 3 options that do not show up in the help function while they are still mentioned in the README.md (--dont-filter-peaks-below-noise-mean, --use-best-multisummit-IDR and --allow-negative-scores).

This should be fixed in version 2.0.3.

Best, Nathan

[ghost]

Thanks a lot Nathan!