How to respond to validation issues

[emmannaemeka]

Hello, Working on using a genome for submission to NCBI contamination errors were sent back. Please how can some of the validation and contamination errors be solved using this tool?

These are the error groups:

1. Genes completely overlapped by other genes
2. FEATURE_LOCATION_CONFLICT: 6626 features have inconsistent gene locations.
3. FEATURE_LOCATION_CONFLICT: RNA feature location does not match gene location
4. FATAL: SHOW_HYPOTHETICAL_CDS_HAVING_GENE_NAME: 2 hypothetical coding regions have a gene name
5. ERROR: valid [SEQ_INST.BadProteinStart] gap symbol at start of protein sequence
6. ERROR: valid [SEQ_INST.StopInProtein] [27] termination symbols in protein sequence