Pierre Marijon

For a real specialization it seems that we are in the same situation as for the constant generic (it may happen one day) [track issue](https://github.com/rust-lang/rust/issues/31844) I'm thinking if we want...

Hi all, I think it could be nice to support any encoding, by add an enum type in `Kmer` definition we can support any encoding. If I didn't made any...

I made some work around this. I create a trait [encoding::Encoder](https://github.com/natir/kmers/blob/encoding/src/encoding/mod.rs), use by Kmer to populate storage. I also created a struct [encoding::Naive](https://github.com/natir/kmers/blob/encoding/src/encoding/naive.rs) that can convert a DNA sequence to...

With v0.6.1 the memory peak is during file reading, use `readSnpMatrixDT.R` like my change solve this issue. But another peak occur during `preProcSample` I assume, it's more specifically in `procSnps`...

The pileup matrix contains 546,700,164 loci. To evaluate number of jointseg I consider `$jointseg` in output produce by `procSample`, I get 5,583,831 jointseg.

Hi @wwood and @kisakesenhi @kisakesenhi maybe you could use [niffler](https://crates.io/crates/niffler) to read transparently row, gz, bz2, xz. Maybe with a feature I could write a PR if you want. Best

Use [MultiGzDecoder](https://docs.rs/flate2/latest/flate2/read/struct.MultiGzDecoder.html) isn't solve your issue ?

I start work on it :)

I add citation and autoreference in example document and I still get same error. ``` diff --git a/example/paper.md b/example/paper.md index 7dcd5fb..6eef7df 100644 --- a/example/paper.md +++ b/example/paper.md @@ -157,6 +157,8 @@...

If you give me some sample dataset I can try to perform runtime analysis and try to improve running time by parallelized or not.