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Improvement: select the cells according to nCount_RNA in the "VlnPlot (Filter Cells)" tab.

Open mAGLAVE opened this issue 4 years ago • 0 comments

Hello, it's me again. Another suggestion for improvement: To select the cells according to nCount_RNA in the "VlnPlot (Filter Cells)" tab. Filtering on nFeature_RNA eliminates heterotypic doublets (2 different cell types, which express different genes: nFeature_RNA and nCount_RNA are higher). Filtering on nCount_RNA eliminates heterotypic doublets, and also homotypic doublets (2 cells of the same type, which express the same genes: nCount_RNA is higher but nFeature_RNA remains unchanged).

mAGLAVE avatar Aug 14 '20 09:08 mAGLAVE